CTO of GenomOncology. I write about AI agents doing real biomedical work.
Pinned
- BioMCP: Biomedical Model Context Protocol
St. Jude talk on LLMs, tools, and biomedical agents - BioMCP
Open-source biomedical tool layer for AI assistants and agents - We Deleted 35 Tools and Our Agent Got Better
Rebuilding BioMCP into one CLI command cut context overhead by 95 percent
Now
Building an agent-driven software factory, growing BioMCP, and figuring out what validated biomedical agents look like behind a hospital firewall.
Recent
- 2026-08-01 project PangoPup
- 2026-06-26 writing From BRAF V600E to 3D Protein Context in 3 BioMCP Commands → biomcp.org
- 2026-05-06 talk Most AI Agents Are Toys. These Ones Treat Cancer
- 2026-04-14 writing Daraxonrasib: Exploring a Breakthrough Cancer Drug in 6 BioMCP Commands → biomcp.org
- 2026-04-09 writing KRAS G12C Treatment Landscape in 7 Commands → biomcp.org
- 2026-03-26 writing Navigate 200 Million Published Articles with BioMCP → biomcp.org
- 2026-03-26 writing Generate Charts Easily from Study Data → biomcp.org
- 2026-03-26 writing Healthcare Agents Need Skills, Not Just Models → biomcp.org
- 2026-03-24 writing cBioPortal Study Analytics in BioMCP → biomcp.org
- 2026-03-04 writing We Deleted 35 Tools and Our Agent Got Better → biomcp.org
- 2025-10-23 talk BioMCP: Biomedical Model Context Protocol
- 2025-04-01 project BioMCP
- 2024-06-27 talk Precision Oncology, Convergence of Genomics and AI, and Improving Cancer Care
- 2024-04-16 talk Building GPT Actions with FastAPI and Pydantic
- 2024-03-07 talk The Intersection of AI and Genomic Analysis
- 2024-01-08 writing What is a Custom GPT?
- 2023-09-06 writing Using grammars to constrain llama.cpp output
- 2023-09-01 paper Cancer Informatics for Cancer Centers: Sharing Ideas on How to Build an AI-Ready Informatics Ecosystem for Radiation Oncology
- 2023-06-19 talk Grounding Medical Q&A using ChatGPT Plugins and Knowledge Graphs
- 2020-07-01 paper The My Cancer Genome clinical trial data model and trial curation workflow
- 2020-04-09 writing What is a Variant Call Format (VCF) File? → genomoncology.com
- 2018-03-07 talk Python in Biology and Genomics
- 2017-08-01 paper AACR Project GENIE: Powering Precision Medicine through an International Consortium
- 2012-01-01 project Precision Oncology Platform (POP)